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1

A Coiled-Coil from the RNA Polymerase β′ Subunit Allosterically Induces Selective Nontemplate Strand Binding by σ70

Brian A. Young, Larry C. Anthony, Tanja M. Gruber, Terrance M. Arthur, Ewa Heyduk, Chi Zen Lu, Meghan M. Sharp, Tomasz Heyduk, Richard R. Burgess, Carol A. Gross

Journal:

Year:

2001

Language:

english

File:

PDF, 365 KB

english, 2001

2

Kinetics of promoter escape by bacterial RNA polymerase: effects of promoter contacts and transcription bubble collapse

Ko, Je, Heyduk, Tomasz

Journal:

Biochemical Journal

Year:

2014

Language:

english

File:

PDF, 916 KB

english, 2014

3

RNA polymerase motions during promoter melting

Feklistov, Andrey, Bae, Brian, Hauver, Jesse, Lass-Napiorkowska, Agnieszka, Kalesse, Markus, Glaus, Florian, Altmann, Karl-Heinz, Heyduk, Tomasz, Landick, Robert, Darst, Seth A.

Journal:

Year:

2017

Language:

english

File:

PDF, 773 KB

english, 2017

4

Fluorescence resonance energy transfer analysis of escherichia coli RNA polymerase and polymerase–DNA complexes

Tomasz Heyduk, Anita Niedziela-Majka

Journal:

Year:

2002

Language:

english

File:

PDF, 367 KB

english, 2002

5

Thiol-Reactive, Luminescent Europium Chelates: Luminescence Probes for Resonance Energy Transfer Distance Measurements in Biomolecules

Ewa Heyduk, Tomasz Heyduk

Journal:

Analytical Biochemistry

Year:

1997

Language:

english

File:

PDF, 229 KB

english, 1997

6

A Real-Time Fluorescence Method to Monitor the Melting of Duplex DNA during Transcription Initiation by RNA Polymerase

Dennis L. Matlock, Tomasz Heyduk

Journal:

Analytical Biochemistry

Year:

1999

Language:

english

File:

PDF, 162 KB

english, 1999

7

Luminescence Energy Transfer with Lanthanide Chelates: Interpretation of Sensitized Acceptor Decay Amplitudes

Tomasz Heyduk, Ewa Heyduk

Journal:

Analytical Biochemistry

Year:

2001

Language:

english

File:

PDF, 134 KB

english, 2001

8

An approach to the elucidation of the quaternary structure role in the activity of pyruvate kinase studies on the immobilized enzyme

Julia Jedrzejak, Tomasz Heyduk, Marian Kochman

Journal:

International Journal of Biochemistry

Year:

1983

Language:

english

File:

PDF, 920 KB

english, 1983

9

Fluorescent homogeneous immunosensors for detecting pathogenic bacteria

Ewa Heyduk, Tomasz Heyduk

Journal:

Analytical Biochemistry

Year:

2010

Language:

english

File:

PDF, 483 KB

english, 2010

10

Practical biophysics: Sensors for rapid detection of biological targets utilizing target-induced oligonucleotide annealing

Journal:

Biophysical Chemistry

Year:

2010

Language:

english

File:

PDF, 756 KB

english, 2010

11

On-column tris(2-carboxyethyl)phosphine reduction and IC5-maleimide labeling during purification of a RpoC fragment on a nickel–nitrilotriacetic acid Column

Veit Bergendahl, Larry C. Anthony, Tomasz Heyduk, Richard R. Burgess

Journal:

Analytical Biochemistry

Year:

2002

Language:

english

File:

PDF, 201 KB

english, 2002

12

Molecular beacons for detecting DNA binding proteins: mechanism of action

Ewa Heyduk, Eric Knoll, Tomasz Heyduk

Journal:

Analytical Biochemistry

Year:

2003

Language:

english

File:

PDF, 269 KB

english, 2003

13

Measuring protein conformational changes by FRET/LRET

Journal:

Current Opinion in Biotechnology

Year:

2002

Language:

english

File:

PDF, 87 KB

english, 2002

14

CAP interacts with RNA polymerase in solution in the absence of promoter DNA

Heyduk, Tomasz, Lee, James C., Ebright, Yon W., Blatter, Erich E., Zhou, Yuhong, Ebright, Richard H.

Journal:

Year:

1993

File:

PDF, 223 KB

1993

15

Molecular beacons for detecting DNA binding proteins

Heyduk, Tomasz, Heyduk, Ewa

Journal:

Nature Biotechnology

Year:

2002

Language:

english

File:

PDF, 111 KB

english, 2002

16

Mapping cyclic nucleotide-induced conformational changes in cyclicAMP receptor protein by a protein footprinting technique using different chemical proteases

Noel Baichoo, Tomasz Heyduk

Journal:

Protein Science

Year:

1999

Language:

english

File:

PDF, 2.97 MB

english, 1999

17

The reactivity and function of cysteine residues in rabbit liver aldolase B

Tomasz Heyduk, Aleksandra Moniewska, Marian Kochman

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1986

Language:

english

File:

PDF, 752 KB

english, 1986

18

Re-evaluation of the role of thiol groups in rabbit muscle aldolase A

Tomasz Heyduk, Marian Kochman

Journal:

Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology

Year:

1986

Language:

english

File:

PDF, 234 KB

english, 1986

19

Promoter spacer DNA plays an active role in integrating the functional consequences of RNA polymerase contacts with − 10 and − 35 promoter elements

Malgorzata Sztiller-Sikorska, Ewa Heyduk, Tomasz Heyduk

Journal:

Biophysical Chemistry

Year:

2011

Language:

english

File:

PDF, 769 KB

english, 2011

20

Zinc inhibition of adenylyl cyclase correlates with conformational changes in the enzyme

Claudette Klein, Tomasz Heyduk, Roger K Sunahara

Journal:

Cellular Signalling

Year:

2004

Language:

english

File:

PDF, 306 KB

english, 2004

21

HMG1 proteins from evolutionary distant organisms distort B-DNA conformation in similar way

Jacek R Wiśniewski, Nicholas M Krohn, Ewa Heyduk, Klaus D Grasser, Tomasz Heyduk

Journal:

Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression

Year:

1999

Language:

english

File:

PDF, 375 KB

english, 1999

22

Temperature-induced conformational transition in rabbit muscle aldolase studied by temperature dependence of sulfhydryl reactivity

Tomasz HEYDUK, Marian KOCHMAN

Journal:

Year:

1985

Language:

english

File:

PDF, 724 KB

english, 1985

23

Carbonic Anhydrase IV: Purification of a Secretory Form of the Recombinant Human Enzyme and Identification of the Positions and Importance of Its Disulfide Bonds

Abdul Waheed, Torayuki Okuyama, Tomasz Heyduk, William S. Sly

Journal:

Archives of Biochemistry and Biophysics

Year:

1996

Language:

english

File:

PDF, 192 KB

english, 1996

24

Determinants for Escherichia coli RNA polymerase assembly within the β subunit

Yi Wang, Konstantin Severinov, Nick Loizos, David Fenyö, Ewa Heyduk, Tomasz Heyduk, Brian T Chait, Seth A Darst

Journal:

Journal of Molecular Biology

Year:

1997

Language:

english

File:

PDF, 669 KB

english, 1997

25

DNA-induced conformational changes in cyclic AMP receptor protein: detection and mapping by a protein footprinting technique using multiple chemical proteases

Noel Baichoo, Tomasz Heyduk

Journal:

Journal of Molecular Biology

Year:

1999

Language:

english

File:

PDF, 1006 KB

english, 1999

26

Luminescence Resonance Energy Transfer Analysis of RNA Polymerase Complexes

Journal:

Year:

2001

Language:

english

File:

PDF, 306 KB

english, 2001

27

Structural changes of rabbit liver fructose-1,6-bisphosphatase: the effect of urea and subtilisin digestion

Andrzej Dżugaj, Tomasz Heyduk, Janina Buczyz.xl, lko, Marian Kochman

Journal:

Archives of Biochemistry and Biophysics

Year:

1985

Language:

english

File:

PDF, 427 KB

english, 1985

28

A Novel Bacteriophage-encoded RNA Polymerase Binding Protein Inhibits Transcription Initiation and Abolishes Transcription Termination by Host RNA Polymerase

Sergei Nechaev, Yulia Yuzenkova, Anita Niedziela-Majka, Tomasz Heyduk, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 409 KB

english, 2002

29

Interaction of T4 AsiA with its Target Sites in the RNA Polymerase σ70 Subunit Leads to Distinct and Opposite Effects on Transcription

Leonid Minakhin, Anita Niedziela-Majka, Konstantin Kuznedelov, Karen Adelman, Jeffrey L Urbauer, Tomasz Heyduk, Konstantin Severinov

Journal:

Journal of Molecular Biology

Year:

2003

Language:

english

File:

PDF, 1.22 MB

english, 2003

30

Transcription Activation at Class II CAP-Dependent Promoters: Two Interactions between CAP and RNA Polymerase

Wei Niu, Younggyu Kim, Gregory Tau, Tomasz Heyduk, Richard H Ebright

Journal:

Year:

1996

Language:

english

File:

PDF, 1.08 MB

english, 1996

31

Core RNA Polymerase from E. coli Induces a Major Change in the Domain Arrangement of the σ70 Subunit

Sandhya Callaci, Ewa Heyduk, Tomasz Heyduk

Journal:

Year:

1999

Language:

english

File:

PDF, 203 KB

english, 1999

32

[Methods in Enzymology] RNA Polymerase and Associated Factors, Part B Volume 274 || Fluorescence anisotropy: Rapid, quantitative assay for protein-DNA and protein-protein interaction

Year:

1996

Language:

english

File:

PDF, 655 KB

english, 1996

33

Nucleic Acid-Based Fluorescence Sensors for Detecting Proteins

Heyduk, Ewa, Heyduk, Tomasz

Journal:

Analytical Chemistry

Year:

2005

Language:

english

File:

PDF, 430 KB

english, 2005

34

Mapping Protein Domains Involved in Macromolecular Interactions: A Novel Protein Footprinting Approach

Heyduk, Ewa, Heyduk, Tomasz

Journal:

Year:

1994

Language:

english

File:

PDF, 2.90 MB

english, 1994

35

Next Generation Sequencing-Based Parallel Analysis of Melting Kinetics of 4096 Variants of a Bacterial Promoter

Heyduk, Ewa, Heyduk, Tomasz

Journal:

Year:

2014

Language:

english

File:

PDF, 3.82 MB

english, 2014

36

Heterogeneous Immunosensors that Do not Require Protein Immobilization

Heyduk, Ewa, Lass, Agnieszka, Tian, Ling, Heyduk, Tomasz

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 38 KB

english, 2011

37

Next Generation Sequencing-Based Parallel Analysis of Melting Kinetics of 4096 Variants of a Bacterial Promoter

Heyduk, Ewa, Heyduk, Tomasz

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 45 KB

english, 2014

38

Determinants of RNA Polymerase $\alpha $ Subunit for Interaction with $\beta $, $\beta ^{\prime}$, and $\sigma $ Subunits: Hydroxyl-Radical Protein Footprinting

Tomasz Heyduk, Ewa Heyduk, Konstantin Severinov, Hong Tang and Richard H. Ebright

Journal:

Proceedings of the National Academy of Sciences

Year:

1996

Language:

english

File:

PDF, 1.30 MB

english, 1996

39

Solution studies on the structure of bent DNA in the cAMP receptor protein-lac DNA complex

Heyduk, Tomasz, Lee, James C.

Journal:

Year:

1992

Language:

english

File:

PDF, 871 KB

english, 1992

40

Sequence Determinants for the Recognition of the Fork Junction DNA Containing the −10 Region of Promoter DNA by E. coli RNA Polymerase †

Matlock, Dennis L., Heyduk, Tomasz

Journal:

Year:

2000

Language:

english

File:

PDF, 102 KB

english, 2000

41

Unimolecular Beacons for the Detection of DNA-Binding Proteins

Knoll, Eric, Heyduk, Tomasz

Journal:

Analytical Chemistry

Year:

2004

Language:

english

File:

PDF, 220 KB

english, 2004

42

Mapping Conformational Changes in a Protein: Application of a Protein Footprinting Technique to cAMP-Induced Conformational Changes in cAMP Receptor Protein †

Baichoo, Noel, Heyduk, Tomasz

Journal:

Year:

1997

Language:

english

File:

PDF, 214 KB

english, 1997

43

Molecular Pincers: Antibody-Based Homogeneous Protein Sensors

Heyduk, Ewa, Dummit, Benjamin, Chang, Yie-Hwa, Heyduk, Tomasz

Journal:

Analytical Chemistry

Year:

2008

Language:

english

File:

PDF, 982 KB

english, 2008

44

Synaptic Complex Formation of Two Retrovirus DNA Attachment Sites by Integrase: A Fluorescence Energy Transfer Study †

Bera, Sibes, Vora, Ajaykumar C., Chiu, Roger, Heyduk, Tomasz, Grandgenett, Duane P.

Journal:

Year:

2005

Language:

english

File:

PDF, 182 KB

english, 2005

45

Mapping Protein Domains Involved in Macromolecular Interactions: A Novel Protein Footprinting Approach. [Erratum to document cited in CA121:103552]

Heyduk, Ewa, Heyduk, Tomasz

Journal:

Year:

1995

Language:

english

File:

PDF, 56 KB

english, 1995

46

Ribosome display enhanced by next generation sequencing: A tool to identify antibody-specific peptide ligands

Heyduk, Ewa, Heyduk, Tomasz

Journal:

Analytical Biochemistry

Year:

2014

Language:

english

File:

PDF, 1.45 MB

english, 2014

47

Characterization of the Interactions between the Bacteriophage T4 AsiA Protein and RNA Polymerase †

Simeonov, Mario F., Bieber Urbauer, Ramona J., Gilmore, Joshua M., Adelman, Karen, Brody, Edward N., Niedziela-Majka, Anita, Minakhin, Leonid, Heyduk, Tomasz, Urbauer, Jeffrey L.

Journal:

Year:

2003

Language:

english

File:

PDF, 376 KB

english, 2003

48

Antigen Peptide-Based Immunosensors for Rapid Detection of Antibodies and Antigens

Tian, Ling, Heyduk, Tomasz

Journal:

Analytical Chemistry

Year:

2009

Language:

english

File:

PDF, 960 KB

english, 2009

49

Detection Methodology Based on Target Molecule-Induced Sequence-Specific Binding to a Single-Stranded Oligonucleotide

Lass-Napiorkowska, Agnieszka, Heyduk, Ewa, Tian, Ling, Heyduk, Tomasz

Journal:

Analytical Chemistry

Year:

2012

Language:

english

File:

PDF, 3.47 MB

english, 2012

50

Conformation and DNA Binding Properties of a Single-Stranded DNA Binding Region of σ 70 Subunit from Escherichia coli RNA Polymerase Are Modulated by an Interaction with the Core Enzyme †

Callaci, Sandhya, Heyduk, Tomasz

Journal:

Year:

1998

Language:

english

File:

PDF, 124 KB

english, 1998